Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015841891.1_cds_XP_016508158.1_21209
CDS Infomation

[gene=LOC107825763] [db_xref=GeneID:107825763] [protein=protein CASP-like] [protein_id=XP_016508158.1] [location=join(28944..29034,31241..31351,31464..31642,32784..32933,34313..34401,34532..34641,34885..34979,35211..35266,35899..36064,36824..36916,37186..37314,37706..37825,38080..38160,40522..40629,40746..40889,40967..41068,41493..41572,42671..42763,42874..42931)] [gbkey=CDS]
Sequence

ATGGATTCCCCGCGAGTAGGACCGGAGAGAGAGAAGGGGAGCTCAACGTCTTCTTCTACT
CCTCTTGCTGCTGTCGCCAGCTTCTGGAAAGACTTTGATTTGGAGAAAGAAAGGAGTACA
CTGGATGAACAAGGTCTTAGGATAGCTGAAAATCAGGAGAACAGTCAGAAGAACCGACGA
AAACTTGCAGAGAGCACTCGAGATTTTAAAAAAGCTTCAAATGAAGACAAGTTGAGCTTG
TTCAACTCTTTGCTCAAGGGATACCAAGAAGAGGTTGACAATCTCACCAAGAGAGCCAAG
TACGGGGAAAATGCTTTTCTTAACATTTACCAGAAATTATATGAGGCCCCAGATCCTTAT
CCGGTCATTGCTTCAATTGCTGAGAAGGATTCAAAACTATCAGAATTAGAGTCTGAGAAC
CGAAAAATGAAGGTTGAACTTGAAGAATTTCGCATGGAGGCAACTCATCTGAAAAATCAA
CAAGCAACAATAAGAAGACTTGAAGACCGGTGCCGCCAGTTAGAGCAACAGATGGAGGAA
AAAGTCAAGGAAATTGTAGAAATCAAGCAACGCAGTTTGGCAGAAGAGAACCAGAAAACA
CTTGAGGTTTTAAAAGAAAGGGAACAATTATTGCAGGATCAGTTACGCCAAGCTCAAGAA
AGTGTTTCTACCATGCAGAAGTTGCACGAACTTGCACAGAGCCAGTTGTTTGAAGTTCGT
GCACAATCAGAGGAAGAGAGAGCAACAAAGCAATCAGAAGTCAATCTCTTAATGGATGAA
GTTGAACGGGCTCAAACTCGCCTTCTTAGTCTTGAAAGAGAAAAGGGATTGTTGCGCACA
CAATTACAGACTGCAAATGAAGATAATGATCACAAGAACAGTGATAACTTGGATGCAGAT
AGTGCTCTTGAGAATTCTTTGTATGCCAAGGAGAAGATAATCTCTGATCTAAATGTGGAA
CTTCATAAGTTGGAGAACACATTATCAAATGAGCGAGAAGATCACATGAATGAGATAAAG
AAGTTGAATTCTCTGCTTCATGAGAAGGAAGTTGCTCTTGAAGAACTAAAGAAGGAACTT
CAAACAAGGCCTACAACAAAATTGGTAGATGATTTGAGGAAGAAAGTTAAGATCTTACAG
GCAGTGGGTTATAATACAATTGAGGCTGAGGATTGGGAAGTTGCTACCAGTGGGCAAGAG
ATGAGCAAACTTGAGTCATTACTTCTTGACAAGAATCGGAAAGTGGAGCATGAGCTAACA
CAGTTGAAGGTCCAACTTTCTGAGCGGACCTCTTTACTGGAATCTGCCGAAGCAAAGATT
GCAGAACTAACTGCAAAGGTTAATGAACAACAAAAGTTAATACAGAAGCTAGAGGATGAT
ATTCTGAAGGGATACAGTTCTAAAGATAGAAAAGGTACTCGATTTGATGATTGGGATCTA
TCTGAGTCTGGTGGAACAGAGCCCCCTGAGAATGCAAAGCAGAGGCACGTTTCCTCAGAC
CAGGATCAGAGCTCAATGCTTAAGGTGATCTGCAACCAAAGAGACCGTTTCCGTGCTCGT
TTGCGGGAGACTGAAGAGGAAATTAGACAGCTGAAGGAGAAGATAGGGGCACTGACCTCA
GAACTTGATAAAACGAAAGCAGATAATGTCAAACTTTATGAAAAGATTCGTTATGTTCAG
GATTATAATTCTGAGAGAGTGATTTCAAGAGGATCAAAAAAGTATGTAGAAGATTTAGAA
AGTGGTTCCAGCTCTGATGTGGAATCCAAATACAAGAAGATGTATGAGGAAGACATAAAT
CCATTTGCGGCATTCTCAAAGAAGGAAAGAGATCAAAGATACAAGGAATTAGGTTTGAGA
GACAAGATTACTCTCAGTAGTGGCCGCTTTCTTCTTGGTAACAAGTACGCTCGGACGTTT
GTATTCTTTTATACCATTGGGTTGCATATTTTAGTATTCACCTGCCTATACAGGATGTCA
GCTTTGAGCTACCTAAGCCATGGTGAAGAATCTCTTATTGGAGATAAGAATCTCAATCTT
CCTCATGCACTATAG

Peptide Sequence

PEP ID

XP_016508158.1
PEP Infomation

PREDICTED: protein CASP-like [Nicotiana tabacum]
Sequence

MDSPRVGPEREKGSSTSSSTPLAAVASFWKDFDLEKERSTLDEQGLRIAENQENSQKNRR
KLAESTRDFKKASNEDKLSLFNSLLKGYQEEVDNLTKRAKYGENAFLNIYQKLYEAPDPY
PVIASIAEKDSKLSELESENRKMKVELEEFRMEATHLKNQQATIRRLEDRCRQLEQQMEE
KVKEIVEIKQRSLAEENQKTLEVLKEREQLLQDQLRQAQESVSTMQKLHELAQSQLFEVR
AQSEEERATKQSEVNLLMDEVERAQTRLLSLEREKGLLRTQLQTANEDNDHKNSDNLDAD
SALENSLYAKEKIISDLNVELHKLENTLSNEREDHMNEIKKLNSLLHEKEVALEELKKEL
QTRPTTKLVDDLRKKVKILQAVGYNTIEAEDWEVATSGQEMSKLESLLLDKNRKVEHELT
QLKVQLSERTSLLESAEAKIAELTAKVNEQQKLIQKLEDDILKGYSSKDRKGTRFDDWDL
SESGGTEPPENAKQRHVSSDQDQSSMLKVICNQRDRFRARLRETEEEIRQLKEKIGALTS
ELDKTKADNVKLYEKIRYVQDYNSERVISRGSKKYVEDLESGSSSDVESKYKKMYEEDIN
PFAAFSKKERDQRYKELGLRDKITLSSGRFLLGNKYARTFVFFYTIGLHILVFTCLYRMS
ALSYLSHGEESLIGDKNLNLPHAL

Transcript Sequence

Gene sequence data has not been registered.